Package: SummaryLasso 1.2.1.9001

Ting-Huei Chen

SummaryLasso: Building Polygenic Risk Score Using GWAS Summary Statistics

Shrinkage estimator for polygenic risk prediction models based on summary statistics of genome-wide association studies. Compatibility updates by Renova.

Authors:Ting-Huei Chen [aut, cre]

SummaryLasso_1.2.1.9001.tar.gz
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SummaryLasso_1.2.1.9001.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
SummaryLasso/json (API)

# Install 'SummaryLasso' in R:
install.packages('SummaryLasso', repos = c('https://renova-r.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/renova-r/summarylasso/issues

Datasets:
  • funcIndex - Inputs for the functional annotations of SNPs.
  • Nvec - A vector of sample sizes for the q traits of the 'summaryZ'.
  • plinkLD - The LD info from output of the software
  • summaryZ - The Z statistics from the univariate analysis of the association between 3614 SNPs and three traits respectively.

On CRAN:

Conda:

1.70 score 2 scripts 109 downloads 2 exports 1 dependencies

Last updated from:75b978f1f3 (on renova-1.2.1.9001). Checks:15 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK117
linux-devel-x86_64OK117
source / vignettesOK176
linux-release-arm64OK116
linux-release-x86_64OK101
macos-release-arm64OK103
macos-release-x86_64OK211
macos-oldrel-arm64OK114
macos-oldrel-x86_64OK226
windows-devel-arm64OK245
windows-devel-x86_64OK163
windows-release-arm64OK173
windows-release-x86_64OK133
windows-oldrel-x86_64OK186
wasm-releaseOK72

Exports:gsfPENgsPEN

Dependencies:gtools